Marine Mammal Institute

Jackson, J. A., Laikre, L., C. Baker, S., & Kendall, K. C.. (2012). Guidelines for collecting and maintaining archives for genetic monitoring. Conservation Genetics Resources, 4(2), 527 - 536. doi:10.1007/s12686-011-9545-x

Taylor, B. L., Archer, F. I., Martien, K. K., Rosel, P. E., Hancock-Hanser, B. L., Lang, A. R., et al.. (2017). Guidelines and quantitative standards to improve consistency in cetacean subspecies and species delimitation relying on molecular genetic data. Marine Mammal Science, 33(S1), 132 - 155. doi:10.1111/mms.12411

C. Baker, S., Dalebout, M. L., Lento, G. M., & Funahashi, N.. (2002). Gray whale products sold in commercial markets along the Pacific coast of Japan. Marine Mammal Science, 18(1), 295 - 300. doi:10.1111/j.1748-7692.2002.tb01036.x

Jackson, J. A., Steel, D. J., Beerli, P., Congdon, B. C., Olavarria, C., Leslie, M. S., et al.. (2014). Global diversity and oceanic divergence of humpback whales (Megaptera novaeangliae). Proceedings of the Royal Society B: Biological Sciences, 281(1786), 20133222. doi:10.1098/rspb.2013.3222

Hamner, R. M., CONSTANTINE, R. O. C. H. E. L. L. E., Mattlin, R., Waples, R., & C. Baker, S.. (2017). Genotype-based estimates of local abundance and effective population size for Hector's dolphins. Biological Conservation, 211, 150 - 160. doi:10.1016/j.biocon.2017.02.044

C. Baker, S., Haussler, D., O’Brien, S. J., Ryder, O. A., Barker, F. K., Clamp, M., et al.. (2009). Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. The Journal of Heredity, 100, 659-74.

Morin, P. A., C. Baker, S., Brewer, R. S., Burdin, A. M., Dalebout, M. L., Dines, J. P., et al.. (2016). Genetic structure of the beaked whale genus Berardius in the North Pacific, with genetic evidence for a new species. Marine Mammal Science. doi:10.1111/mms.12345

Oremus, M., Gales, R., Kettles, H., & C. Baker, S.. (2013). Genetic Evidence of Multiple Matrilines and Spatial Disruption of Kinship Bonds in Mass Strandings of Long-finned Pilot Whales, Globicephala melas. Journal of Heredity. doi:10.1093/jhered/est007

C. Baker, S., Steel, D. J., Choi, Y., Lee, H., Kim, K. Seok, Choi, S. Kyoung, et al.. (2010). Genetic evidence of illegal trade in protected whales links Japan with the US and South Korea. Biology Letters.

Carroll, E. L., Ott, P. H., McMillan, L. F., Vernazzani, B. Galletti, Neveceralova, P., Vermeulen, E., et al.. (2020). Genetic Diversity and Connectivity of Southern Right Whales (Eubalaena australis) Found in the Brazil and Chile–Peru Wintering Grounds and the South Georgia (Islas Georgias del Sur) Feeding Ground. (K. Andrews, Ed.)Journal of Heredity, 111(3), 263 - 276. doi:10.1093/jhered/esaa010

Cypriano-Souza, A. Lúcia, Engel, M. H., Caballero, S., Olavarría, C., Flórez-González, L., Capella, J., et al.. (2017). Genetic differentiation between humpback whales (Megaptera novaeangliae) from Atlantic and Pacific breeding grounds of South America. Marine Mammal Science, 33(213), 457 - 479. doi:10.1111/mms.2017.33.issue-210.1111/mms.12378

Hamner, R. M., Pichler, F. B., Heimeier, D., Constantine, R., & C. Baker, S.. (2012). Genetic differentiation and limited gene flow among fragmented populations of New Zealand endemic Hector’s and Maui’s dolphins. Conservation Genetics, 13(4), 987 - 1002. doi:10.1007/s10592-012-0347-9

Hill, M. C., Bradford, A. L., Steel, D. J., C. Baker, S., Ligon, A. D., Ü, A. C., et al.. (2020). Found: a missing breeding ground for endangered western North Pacific humpback whales in the Mariana Archipelago. Endangered Species Research, 41, 91 - 103. doi:10.3354/esr01010

Carroll, E., Fewster, R. M., Childerhouse, S., Patenaude, N. J., Boren, L., & C. Baker, S.. (2016). First Direct Evidence for Natal Wintering Ground Fidelity and Estimate of Juvenile Survival in the New Zealand Southern Right Whale Eubalaena australis. PLOS ONE, 11(1), e0146590. doi:10.1371/journal.pone.0146590.s002

Rosenbaum, H. C., Kershaw, F., Mendez, M., Pomilla, C., Leslie, M. S., Findlay, K. P., et al.. (2017). First circumglobal assessment of Southern Hemisphere humpback whale mitochondrial genetic variation and implications for management. Endangered Species Research, 32, 551 - 567. doi:10.3354/esr00822

Garrigue, C., Franklin, T., Constantine, R., Russell, K., Burns, D., Poole, M. M., et al.. (2011). First assessment of interchange of humpback whales between Oceania and the east coast of Australia. Journal of Cetacean Research and Management, (Special Issue 3), 269-74.

Hedrick, P. W., Allendorf, F. W., & C. Baker, S.. (2013). Estimation of Male Gene Flow from Measures of Nuclear and Female Genetic Differentiation. Journal of Heredity, 104(5), 713 - 717. doi:10.1093/jhered/est047

C. Baker, S., Cooke, J., Lavery, S., Dalebout, M. L., Ma, Y. -un, Funahashi, N., et al.. (2007). Estimating the number of whales entering trade using DNA profiling and capture-recapture analysis of market products. Molecular Ecology, 13, 2617-2626.

Jackson, J., Pinsky, M. L., & C. Baker, S.. (2009). Erratum. How few whales were there after whaling? Inference from contemporary mtDNA diversity. Molecular Ecology, 18(19), 4134-5.

Bors, E. K., C. Baker, S., Wade, P. R., O’Neill, K. B., Shelden, K. E. W., Thompson, M. J., et al.. (2021). An epigenetic clock to estimate the age of living beluga whales. Evolutionary Applications. doi:10.1111/eva.13195

C. Baker, S., Steel, D. J., Nieukirk, S., & Klinck, H.. (2018). Environmental DNA (eDNA) From the Wake of the Whales: Droplet Digital PCR for Detection and Species Identification. Frontiers in Marine Science, 5. doi:10.3389/fmars.2018.00133

Derville, S., Constantine, R., C. Baker, S., Oremus, M., & Torres, L. G.. (2016). Environmental correlates of nearshore habitat distribution by the Critically Endangered Maūi dolphin. Marine Ecology Progress Series, 551, 261 - 275. doi:10.3354/meps11736

Barlow, D. R., Torres, L. G., Hodge, K. B., Steel, D. J., C. Baker, S., Chandler, T. E., et al.. (2018). Documentation of a New Zealand blue whale population based on multiple lines of evidence. Endangered Species Research, 36, 27-40. doi:https://doi.org/10.3354/esr00891

C. Baker, S., Vant, M. D., Dalebout, M. L., Lento, G. M., O'Brien, S. J., & Yuhki, N.. (2006). Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (Suborder: Mysticeti). Immunogenetics, 58, 283-296.

Dalebout, M. L., C. Baker, S., Steel, D. J., Robertson, K. M., Chivers, S. J., Perrin, W. F., et al.. (2007). A divergent mtDNA lineage among Mesoplodon beaked whales: Molecular evidence for a new species in the tropical pacific?. Marine Mammal Science, 23, 954-966.