Marine Mammal Institute

Foote AD, Martin MD, Louis M, Pacheco G, Robertson KM, Sinding M‐HS, Amaral AR, Baird RW, C. Baker S, Ballance LT, et al. Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology. 2019 ;28(14):3427-3444.

Van Cise AM, Baird RW, C. Baker S, Cerchio S, Claridge D, Fielding R, Hancock‐Hanser B, Marrero J, Martien KK, Mignucci‐Giannoni AA, et al. Oceanographic barriers, divergence, and admixture: Phylogeography and taxonomy of two putative subspecies of short‐finned pilot whale. Molecular Ecology. 2019 .

Derville S, Torres LG, Albertson RG, Andrews O, C. Baker S, Carzon P, CONSTANTINE ROCHELLE, Donoghue M, Dutheil C, Gannier A, et al. Whales in warming water: Assessing breeding habitat diversity and adaptability in Oceania's changing climate. Global Change Biology. 2019 ;25(4):1466 - 1481.

Riekkola L, Zerbini AN, Andrews O, Andrews-Goff V, C. Baker S, Chandler D, Childerhouse S, Clapham P, Dodémont R, Donnelly D, et al. Application of a multi-disciplinary approach to reveal population structure and Southern Ocean feeding grounds of humpback whales. Ecological Indicators. 2018 ;89:455 - 465.

Morin PA, Foote AD, C. Baker S, Hancock-Hanser BL, Kaschner K, Mate B, Mesnick SL, Pease VL, Rosel PE, Alexander A. Demography or selection on linked cultural traits or genes? Investigating the driver of low mtDNA diversity in the sperm whale using complementary mitochondrial and nuclear genome analyses. Molecular Ecology. 2018 ;27(suppl. 1):2604-2619.

Barlow DR, Torres LG, Hodge KB, Steel DJ, C. Baker S, Chandler TE, Bott N, Constantine R, Double M, Gill P, et al. Documentation of a New Zealand blue whale population based on multiple lines of evidence. Endangered Species Research. 2018 ;36:27-40.

C. Baker S, Steel DJ, Nieukirk S, Klinck H. Environmental DNA (eDNA) From the Wake of the Whales: Droplet Digital PCR for Detection and Species Identification. Frontiers in Marine Science. 2018 ;5.

Pallin L, C. Baker S, Steel DJ, Kellar NM, Robbins J, Johnston DW, Nowacek DP, Read AJ, Friedlaender A. High pregnancy rates in humpback whales (Megaptera novaeangliae) around the Western Antarctic Peninsula, evidence of a rapidly growing population. Royal Society Open Science. 2018 ;5(5):180017.

Carroll EL, Alderman R, BANNISTER JL, Bérubé M, Best PB, Boren L, C. Baker S, Constantine R, Findlay K, Harcourt R, et al. Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species. Heredity. 2018 .

Steel DJ, Anderson M, Garrigue C, Olavarria C, Caballero S, Childerhouse S, Clapham P, Constantine R, Dawson S, Donoghue M, et al. Migratory interchange of humpback whales (Megaptera novaeangliae) among breeding grounds of Oceania and connections to Antarctic feeding areas based on genotype matching. Polar Biology. 2018 ;41(4):653 - 662.

Albertson RG, Friedlaender A, Steel DJ, Aguayo-Lobo A, Bonatto SL, Cabellero S, Constantine R, Cypriano-Souza ALúcia, Engel MH, Garrigue C, et al. Temporal stability and mixed-stock analyses of humpback whales (Megaptera novaeangliae) in the nearshore waters of the Western Antarctic Peninsula. Polar Biology. 2018 ;41(2):323-340.

Torres LG, Rayment W, Olavarría C, Thompson DR, Graham B, C. Baker S, PATENAUDE NATHALIE, Bury SJane, BOREN LAURA, Parker G, et al. Demography and ecology of southern right whales Eubalaena australis wintering at sub-Antarctic Campbell Island, New Zealand. Polar Biology [Internet]. 2017 ;40(1):95-106. http://link.springer.com/article/10.1007/s00300-016-1926-x

Rosenbaum HC, Kershaw F, Mendez M, Pomilla C, Leslie MS, Findlay KP, Best PB, Collins T, Vely M, Engel MH, et al. First circumglobal assessment of Southern Hemisphere humpback whale mitochondrial genetic variation and implications for management. Endangered Species Research [Internet]. 2017 ;32:551 - 567. http://www.int-res.com/abstracts/esr/v32/p551-567

Cypriano-Souza ALúcia, Engel MH, Caballero S, Olavarría C, Flórez-González L, Capella J, Steel DJ, Sremba AL, Aguayo A, Thiele D, et al. Genetic differentiation between humpback whales (Megaptera novaeangliae) from Atlantic and Pacific breeding grounds of South America. Marine Mammal Science [Internet]. 2017 ;33(213):457 - 479. http://doi.wiley.com/10.1111/mms.2017.33.issue-2

Hamner RM, CONSTANTINE ROCHELLE, Mattlin R, Waples R, C. Baker S. Genotype-based estimates of local abundance and effective population size for Hector's dolphins. Biological Conservation [Internet]. 2017 ;211:150 - 160. http://linkinghub.elsevier.com/retrieve/pii/S0006320717306699

Taylor BL, Archer FI, Martien KK, Rosel PE, Hancock-Hanser BL, Lang AR, Leslie MS, Mesnick SL, Morin PA, Pease VL, et al. Guidelines and quantitative standards to improve consistency in cetacean subspecies and species delimitation relying on molecular genetic data. Marine Mammal Science [Internet]. 2017 ;33(S1):132 - 155. http://doi.wiley.com/10.1111/mms.12411

Tezanos-Pinto G, Hupman K, Wiseman N, Dwyer SL, C. Baker S, Brooks L, Outhwaite B, Lea C, Stockin KA. Local abundance, apparent survival and site fidelity of Bryde’s whales in the Hauraki Gulf (New Zealand) inferred from long-term photo-identification. Endangered Species Research [Internet]. 2017 ;34:61 - 73. http://www.int-res.com/abstracts/esr/v34/p61-73/

Gabriele CM, Neilson JL, Straley JM, C. Baker S, Cedarleaf JA, Saracco JF. Natural history, population dynamics, and habitat use of humpback whales over 30 years on an Alaska feeding ground. Ecosphere [Internet]. 2017 ;8(1):e01641. http://doi.wiley.com/10.1002/ecs2.1641

Albertson RG, Baird RW, Oremus M, M. Poole M, Martien KK, C. Baker S. Staying close to home? Genetic differentiation of rough-toothed dolphins near oceanic islands in the central Pacific Ocean. Conservation Genetics. 2017 ;18(1):33-51.

Derville S, Constantine R, C. Baker S, Oremus M, Torres LG. Environmental correlates of nearshore habitat distribution by the Critically Endangered Maūi dolphin. Marine Ecology Progress Series. 2016 ;551:261 - 275.

Carroll E, Fewster RM, Childerhouse S, Patenaude NJ, Boren L, C. Baker S. First Direct Evidence for Natal Wintering Ground Fidelity and Estimate of Juvenile Survival in the New Zealand Southern Right Whale Eubalaena australis. PLOS ONE. 2016 ;11(1):e0146590.

Morin PA, C. Baker S, Brewer RS, Burdin AM, Dalebout ML, Dines JP, Fedutin I, Filatova O, Hoyt E, Jung J-L, et al. Genetic structure of the beaked whale genus Berardius in the North Pacific, with genetic evidence for a new species. Marine Mammal Science. 2016 .

Thompson KF, Patel S, Williams L, Tsai P, Constantine R, C. Baker S, Millar CD. High coverage of the complete mitochondrial genome of the rare Gray’s beaked whale (Mesoplodon grayi) using Illumina next generation sequencing. Mitochondrial DNA. 2016 ;27(1):128 - 129.

Pérez-Alvarez MJ, Olivarría C, Moraga R, C. Baker S, Hamner RM, Poulin E. Historical dimensions of population structure in a continuously distributed marine species: The case of the endemic Chilean dolphin. Scientific Reports [Internet]. 2016 ;6(1). http://www.nature.com/articles/srep35507

Jackson JA, Carroll E, Smith TD, Zerbini AN, Patenaude NJ, C. Baker S. An integrated approach to historical population assessment of the great whales: case of the New Zealand southern right whale. Royal Society Open Science. 2016 ;3(3):150669.