Lord-Castillo, B.K., Wright, D.J., Mate, B.R., and Follett, T. (2009). A customization of the Arc Marine data model to support whale tracking via satellite telemetry. Transactions in GIS 13(s1): 63-83.

Schick, R.S., Halpin, P.N., Read, A.J., Slay, C.S., Kraus, S.D., Mate, B.R., Baumgartner, M.F., Roberts, J.J.,Good, C.P., Best, B.D., Loarie, S.R., and Clark, J.S. (2009). Striking the right balance in right whale conservation.  Can. J. Fisheries and Aquatic Sciences, 66:1399-1403.

Cotte, C., Guinet, C., Taupeir-Letage, I., Mate, B., Petiau, E.  (2009).  Scale-dependent habitat use by a large free-ranging predator, the Mediterranean fin whale.  Deep Sea Research I (56:801-811), doi:10.1016/j.dsr.2008.12.008

Benoit-Bird, K.J., Gilly, W.F, Au, W.W.L, and B. Mate,  2008. Controlled and in situ target strengths of the jumbo squid Docidicus gigas and identification of potential acoustic scattering sources. Journal of the Acoustical Society of America, 123:1318-1328.

Mate, B.R. 2008.  Technical instrumentation issues related to the design and execution of a controlled-exposure experiment for larger cetaceans to assess possible behavioural responses and potential impacts. Bioacoustics, Vol. 17, pp. 334-336. Special issue: International Conference on the Effects of Noise on Aquatic Life, Nyborg, Denmark, August 13-17, 2007.

Lagerquist, B.A., B.R. Mate, J.G. Ortega-Ortiz, M. Winsor and J. Urban-Ramirez. 2008. Migratory movements and surfacing rates of humpback whales (Megaptera novaeangliae) satellite tagged at Socorro Island, Mexico. Marine Mammal Science 24:815-830.

Mate, B., R. Mesecar and B. Lagerquist. 2007. The evolution of satellite-monitored radio tags for large whales: One laboratory's experience. Deep Sea Research II 54: 224-247.

Etnoyer, P., D. Canny, B.R. Mate, L. E. Morgan, J.G. Ortega-Ortiz and W.J. Nichols. 2006. Sea-surface temperature gradients across blue whale and sea turtle foraging trajectories off the Baja California Peninsula, Mexico. Deep Sea Research Part II 53:340-358.

Mate, B., P. Duley, B. Lagerquist, F. Wenzel, A. Stimpert and P. Clapham. 2005. Observations of a female North Atlantic right whale (Eubalaena glacialis) in simultaneous copulation with two males: supporting evidence for sperm competition. Aquatic Mammals 31:157-160.

Baumgartner, M.F. and B.R. Mate. 2005. Summer and fall habitat of North Atlantic right whales (Eubalaena glacialis) inferred from satellite telemetry. Canadian Journal of Fisheries and Aquatic Science. 62:527-543.

Mate, B.R., B.A. Lagerquist, M. Winsor, J. Geraci and J.H. Prescott. 2005. Movements and dive habits of a satellite-monitored long-finned pilot whale (Globicephala melas) in the Northwest Atlantic. Marine Mammal Science 21:136-144.

Etnoyer, P., Canny, D., Mate, B., and L. Morgan. 2004. Persistent pelagic habitats in the Baja California to Bering Sea (B2B) ecoregion. Oceanography 17:90-101.

Urbán R., J., V. Flores de Sahagún, M.L. Jones, S.L. Swartz, B. Mate, A. Gómez-Gallardo and M. Guerrero-Ruíz. 2004. Gray whales with loss of flukes adapt and survive. Marine Mammal Science 20:335-338.

Norman, S.A., C.E. Bowlby, M.S. Brancato, J. Calambokidis, D. Duffield, P.J. Gearin, T.A. Gornall, M.E. Gosho, B. Hanson, H, Hodder, S. Jeffries, B. Lagerquist, D.M. Lambourn, B. Mate, B. Norberg, R.W. Osborne, J.A. Rash, S. Riemer and J. Scordino. 2004. Cetacean strandings in Oregon and Washington between 1930 and 2002. Journal of Cetacean Research and Management 6:87-99.

Mate, B.R., B.A. Lagerquist and J. Urban. 2003. A note on using satellite telemetry to document the use of San Ignacio Lagoon by gray whales (Eschrichtius robustus) during their reproductive season. Journal of Cetacean Research and Management 5:148-154.

Mate, B. R. and J. Urban-Ramirez. 2003. A note on the route and speed of a gray whale on its northern migration from Mexico to central California, tracked by satellite-monitored radio tag. Journal of Cetacean Research Management 5:155-157.

Baumgartner, M.F. and B.R. Mate. 2003. Summertime foraging ecology of North Atlantic right whales. Marine Ecological Progress Series (MEPS) 264:123-135.

Baumgartner,M.F., T.V.N. Cole, P.J. Clapham and B.R. Mate. 2003. North Atlantic right whale habitat in the lower Bay of Fundy and on the Southwestern Scotian Shelf during 1999-2001. Marine Ecological Progress Series (MEPS) 264:137-154.

Durbin, E., G. Teegarden, R. Campbell, A. Cembella, M. Baumgartner and B.R. Mate. 2002. North Atlantic right whales, Eubalaena glacialis, exposed to paralytic shellfish poisoning (PSP) toxins via a zooplankton vector, Calanus finmarchicus. Harmful Algae 1: 243–251.

Lagerquist, B.A., K.M. Stafford and B.R. Mate. 2000. Dive characteristics of satellite-monitored blue whales (Balaenoptera musculus) off the central California coast. Marine Mammal Science 16: 375-391.

Krutzikowsky, G.K. and B.R. Mate. 2000. Dive and surfacing characteristics of bowhead whales (Balaena mysticetus) in the Beaufort and Chukchi Seas. Canadian Journal of Zoology 78:1182-1198

LeBoeuf, B.J., H. Pérea-Cortés M., J. Urbán R., B.R. Mate and F. Ollervides U. 2000. High gray whale mortality and low recruitment in 1999: potential causes and implications. Journal of Cetacean Research Management 2:85-99.

Mate, B.R., G.K. Krutzikowsky and M.H. Winsor. 2000. Satellite-monitored movements of radio-tagged bowhead whales in the Beaufort and Chukchi seas during the late-summer feeding season and fall migration. Canadian Journal of Zoology 78:1168-1181.

Mate, B.R., B.A. Lagerquist and J. Calambokidis. 1999. Movements of North Pacific blue whales during the feeding season off southern California and their southern fall migration. Marine Mammal Science 15:1246-1257.