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A
Alexander A, Steel DJ, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS.  2013.  Low Diversity in the Mitogenome of Sperm Whales Revealed by Next-Generation Sequencing. Genome Biology and Evolution. 5(1):113-129.
Ancel A, Horning M, Kooyman GL.  1997.  Prey ingestion revealed by oesophagus and stomach temperature recordings in cormorants. The Journal of Experimental Biology. 200(Pt 1):149-54. Abstract
B
Bailey H, Mate B, Palacios DM, Irvine L, Bograd SJ, Costa DP.  2010.  Behavioural estimation of blue whale movements in the Northeast Pacific from state-space model analysis of satellite tracks. Endangered Species Research. 10:93-106. Abstract
Baker CS, Lukoschek V, Lavery S, Dalebout ML, Ma Y-un, Endo T, Funahashi N.  2006.  Incomplete reporting of whale, dolphin and porpoise ‘bycatch' revealed by molecular monitoring of Korean markets. Animal Conservation. 9:474-482.
Baker CS, Steel DJ, Choi Y, Lee H, Kim KS, Choi SK, Ma Y-un, Hambleton C, Psihoyos L, Brownell RL et al..  2010.  Genetic evidence of illegal trade in protected whales links Japan with the US and South Korea. Biology Letters. Abstract
Baker CS, Cipriano F, Palumbi SR.  1996.  Molecular genetic identification of whale and dolphin products from commercial markets in Korea and Japan. Molecular Ecology. 5(5):671-685.
Baker CS, Sremba AL, Martin AR.  2012.  Proposal to the Scientific Committee: Single nuclear polymorphism (SNP) discovery and diversity in bones from South Georgia Island and contemporary Antarctic blue whales: a request for access to IDCR-SOWER biopsy samples (1990-2009). Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Gilbert DA, Weinrich MT, Lambertsen RH, Calambokidis J, McArdle B, Chambers GK, O'Brien SJ.  1993.  Population characteristics of DNA fingerprints in humpback whales (Megaptera novaeangliae). The Journal of heredity. 84(4):281-90. Abstract
Baker CS, Lento GM, Cipriano F, Palumbi SR.  2000.  Predicted decline of protected whales based on molecular genetic monitoring of Japanese and Korean markets. Proceedings of the Royal Society B: Biological Sciences. 267(1449):1191-1199.
Baker CS, Cooke J, Lavery S, Dalebout ML, Ma Y-un, Funahashi N, Carraher C, Brownell, Jr. RL.  2007.  Estimating the number of whales entering trade using DNA profiling and capture-recapture analysis of market products. Molecular Ecology. 13:2617-2626.
Baker CS, Slade RW, Bannister JL, Abernethy RB, Weinrich MT, Lien J, Urbán-Ramirez J, Corkeron P, Calambokidis J, Vasquez O et al..  1994.  Hierarchical structure of mitochondrial DNA gene flow among humpback whales Megaptera novaeangliae, world-wide. Molecular Ecology. 3(4):313-327.
Baker CS, Galletti B, Childerhouse S, Brownell, Jr. RL, Friedlaender A, Gales N, Hall A, Jackson J, Leaper R, Perryman W et al..  2012.  Report of the Symposium and Workshop on Living Whales in the Southern Ocean: Puerto Varas, Chile 27–29 March 2012. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Chilvers BL, Constantine R, DuFresne S, Mattlin RH, van Helden A, Hitchmough R.  2010.  Conservation status of New Zealand marine mammals (suborders Cetacea and Pinnipedia), 2009. New Zealand Journal of Marine and Freshwater Research. 44(2):101-115. Abstract
Baker CS, Palumbi SR, Lambertsen RH, Weinrich MT, Calambokidis J, O'Brien SJ.  1990.  Influence of seasonal migration on geographic distribution of mitochondrial DNA haplotypes in humpback whales. Nature. 344(6263):238-40. Abstract
Baker CS, Hamner RM, Cooke J, Heimeier D, Vant M, Steel DJ, Constantine R.  2012.  Low abundance and probable decline of the critically endangered Maui's dolphin estimated by genotype capture-recapture. Animal Conservation.
Baker CS, Dalebout ML, Lento GM, Funahashi N.  2002.  Gray whale products sold in commercial markets along the Pacific coast of Japan. Marine Mammal Science. 18(1):295-300.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Brownell RL, Stone GS.  2013.  Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati. Animal Conservation. :n/a-n/a.
Baker CS, Medrano-Gonzalez L, Calambokidis J, Perry A, Pichler FB, Rosenbaum H, Straley JM, Urbán-Ramirez J, Yamaguchi M, von Ziegesar O.  1998.  Population structure of nuclear and mitochondrial DNA variation among humpback whales in the North Pacific. Molecular Ecology. 7(6):695-707.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Stone GS.  2012.  Species identity and local use of cetaceans in the Gilbert Islands, Republic of Kiribati. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Palumbi SR.  1994.  Which Whales Are Hunted? A Molecular Genetic Approach to Monitoring Whaling Science. 265(5178):1538-1539.
Baker CS.  2008.  A truer measure of the market: the molecular ecology of fisheries and wildlife trade. Molecular Ecology. 17(18):3985-98. Abstract
Baker CS, Vant MD, Dalebout ML, Lento GM, O'Brien SJ, Yuhki N.  2006.  Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (Suborder: Mysticeti). Immunogenetics. 58:283-296.
Barlow J, Calambokidis J, Falcone EA, Baker CS, Burdin AM, Clapham PJ, Ford JKB, Gabriele CM, LeDuc R, Mattila DK et al..  2011.  Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. Marine Mammal Science. 27(4):793-818.
Baumgartner MF, Mate B.  2005.  Summer and fall habitat of North Atlantic right whales (Eubalaena glacialis) inferred from satellite telemetry. Canadian Journal of Fisheries and Aquatic Science. 62:527-543.
Baumgartner MF, Cole TVN, Clapham P, Mate B.  2003.  North Atlantic right whale habitat in the lower Bay of Fundy and on the Southwestern Scotian Shelf during 1999-2001. Marine Ecological Progress Series (MEPS). 264:137-154.