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2012
Hamner RM, Oremus M, Stanley M, Brown P, Constantine R, Baker CS.  2012.  Estimating the abundance and effective population size of Maui’s dolphins using microsatellite genotypes in 2010–11, with retrospective matching to 2001–07.
Sampson K, Merigo C, Lagueux K, Rice JM, Cooper R, Weber III SE, Kass P, Mandelman J, Innis C.  2012.  Clinical assessment and postrelease monitoring of 11 mass stranded dolphins on Cape Cod, Massachusetts. Marine Mammal Science. Abstract
Wade PR, Baker CS.  2012.  High plausibility of Hypothesis III for stock structure of the western North Pacific minke. Report to the Scientific Committee of the International Whaling Commission.
Mate B.  2012.  Implementation of Acoustic Dosimeters With Recoverable Month-Long GPS/TDR Tags to Interpret Controlled-Exposure Experiments for Large Whales. The Effects of Noise on Aquatic Life. 730:203-205.
Schmitt NT, Double MC, Baker CS, Steel DJ, Jenner KCS, Jenner MN, Paton D, Gales R, Jarman SN, Gales N et al..  2012.  Low levels of genetic differentiation characterize Australian humpback whale (Megaptera novaeangliae) populations. Report to the Scientific Committee of the International Whaling Commission.
Jackson JA, Anderson M, Steel DJ, Brooks L, Baverstock P, Burns D, Clapham P, Constantine R, Franklin W, Franklin T et al..  2012.  Multistate measurements of genotype interchange between east Australia and Oceania (IWC breeding sub-stocks E1, E2, E3 and F) between 1999 and 2004. Report to the Scientific Committee of the International Whaling Commission.
Dalebout ML, Baker CS, Steel DJ, Thompson K, Robertson KM, Chivers SJ, Perrin WF, Goonatilake M, Anderson RC, Mead JG et al..  2012.  A Newly Recognised Beaked Whale (Ziphiidae) in the Tropical Indo-Pacific: Mesoplodon hotaula or M. ginkgodens hotaula. Report to the Scientific Committee of the International Whaling Commission.
Horning M, Mellish JE.  2012.  Predation on an Upper Trophic Marine Predator, the Steller Sea Lion: Evaluating High Juvenile Mortality in a Density Dependent Conceptual Framework. PLoS ONE . 7(1): e30173.
Oremus M, Legata J, Hurutarau J, Taei S, Donoghue M, Baker CS.  2012.  Progress report on the genetic and demographic assessment of dolphin taken in live-capture and traditional drive-hunt in the Solomon Islands. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Sremba AL, Martin AR.  2012.  Proposal to the Scientific Committee: Single nuclear polymorphism (SNP) discovery and diversity in bones from South Georgia Island and contemporary Antarctic blue whales: a request for access to IDCR-SOWER biopsy samples (1990-2009). Report to the Scientific Committee of the International Whaling Commission.
Slikas B, Baker CS, Clapham P, Frasier TR, Seger J, Valenzuela L, Wade P.  2012.  Proposal to the Scientific Committee: Worldwide genetic diversity and phylogenetic relationships among right whales based on next-generation sequencing of complete mitochondrial geneomes and multiple nuclear loci. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Galletti B, Childerhouse S, Brownell, Jr. RL, Friedlaender A, Gales N, Hall A, Jackson J, Leaper R, Perryman W et al..  2012.  Report of the Symposium and Workshop on Living Whales in the Southern Ocean: Puerto Varas, Chile 27–29 March 2012. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Stone GS.  2012.  Species identity and local use of cetaceans in the Gilbert Islands, Republic of Kiribati. Report to the Scientific Committee of the International Whaling Commission.
Tiedemann R, Cipriano F, Morin PA, Hoelzel AR, Palsbøll P, Waples RS, Natoli L, Bachmann L, Postma L, Double MC et al..  2012.  Updated guidelines for DNA data quality control and error rate estimation, for genetic studies relevant to IWC management advice. Report to the Scientific Committee of the International Whaling Commission.
2011
Mathews EA, Womble JN, Pendleton GW, Jemison LA, Maniscalco JM, Streveler G.  2011.  Population growth and colonization of Steller sea lions in the Glacier Bay region of southeastern Alaska: 1970s-2009. Marine Mammal Science. 27(4):852-880.
Mate B, Best P, Lagerquist BA, Winsor M.  2011.  Coastal, offshore, and migratory movements of South African right whales revealed by satellite telemetry. Marine Mammal Science. 27:455-476. Abstract
Block BA, Jonsen ID, Jorgensen SJ, Winship AJ, Shaffer SA, Bograd SJ, Hazen EL, Foley DG, Breed GA, Harrison A-L et al..  2011.  Tracking apex marine predator movements in a dynamic ocean. Nature. 479:86-90.
Hollatz C, Flach L, Baker CS, Santos FR.  2011.  Microsatellite data reveal fine genetic structure in male Guiana dolphins (Sotalia guianesis) in two geographically close embayments at south-eastern coast of Brazil. Marine Biology. 158(4):927-933. Abstract
Costello MJ, Baker CS.  2011.  Who eats sea meat? Expanding human consumption of marine mammals Biological Conservation. 144(12):2745-2746.
Carroll EL, Patenaude NJ, Childerhouse SJ, Kraus SD, Fewster RM, Baker CS.  2011.  Abundance of the New Zealand subantarctic southern right whale population estimated from photo-identification and genotype mark-recapture. Marine Biology. 158(11):2565-2575. Abstract
Bentaleb I, Martin C, Vrac M, Mate B, Mayzaud P, Siret D, de Stephanis R, Guinet C.  2011.  Foraging ecology of Mediterranean fin whales in a changing environment elucidated by satellite ­tracking and baleen plate stable isotopes. Marine Ecology Progress Series. 438:285-302. Abstract
Barlow J, Calambokidis J, Falcone EA, Baker CS, Burdin AM, Clapham PJ, Ford JKB, Gabriele CM, LeDuc R, Mattila DK et al..  2011.  Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. Marine Mammal Science. 27(4):793-818.
Wiseman N, Parsons S, Stockin KA, Baker CS.  2011.  Seasonal occurrence and distribution of Bryde's whales in the Hauraki Gulf, New Zealand. Marine Mammal Science. 27(4):E253-E267. Abstract
Wintle NJP, Duffield DA, Barros NB, Jones RD, Rice JM.  2011.  Total mercury in stranded marine mammals from the Oregon and southern Washington coasts. Marine Mammal Science. 27(4):E268-E278. Abstract
Ortega-Ortiz JG, Engelhaupt D, Winsor M, Mate B, Hoelzel AR.  2011.  Kinship of long-term associates in the highly social sperm whale. Molecular Ecology. Abstract