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Slikas B, Baker CS, Clapham P, Frasier TR, Seger J, Valenzuela L, Wade P.  2012.  Proposal to the Scientific Committee: Worldwide genetic diversity and phylogenetic relationships among right whales based on next-generation sequencing of complete mitochondrial geneomes and multiple nuclear loci. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Sremba AL, Martin AR.  2012.  Proposal to the Scientific Committee: Single nuclear polymorphism (SNP) discovery and diversity in bones from South Georgia Island and contemporary Antarctic blue whales: a request for access to IDCR-SOWER biopsy samples (1990-2009). Report to the Scientific Committee of the International Whaling Commission.
Oremus M, Legata J, Hurutarau J, Taei S, Donoghue M, Baker CS.  2012.  Progress report on the genetic and demographic assessment of dolphin taken in live-capture and traditional drive-hunt in the Solomon Islands. Report to the Scientific Committee of the International Whaling Commission.
Ancel A, Horning M, Kooyman GL.  1997.  Prey ingestion revealed by oesophagus and stomach temperature recordings in cormorants. The Journal of Experimental Biology. 200(Pt 1):149-54. Abstract
Mellish JE, Hindle AJ, Horning M.  2010.  A preliminary assessment of the impact of disturbance and handling on Weddell seals of McMurdo Sound, Antarctica. Antarctic Science. 22(01):25. Abstract
Baker CS, Lento GM, Cipriano F, Palumbi SR.  2000.  Predicted decline of protected whales based on molecular genetic monitoring of Japanese and Korean markets. Proceedings of the Royal Society B: Biological Sciences. 267(1449):1191-1199.
Horning M, Mellish JE.  2012.  Predation on an Upper Trophic Marine Predator, the Steller Sea Lion: Evaluating High Juvenile Mortality in a Density Dependent Conceptual Framework. PLoS ONE . 7(1): e30173.
Baker CS, Medrano-Gonzalez L, Calambokidis J, Perry A, Pichler FB, Rosenbaum H, Straley JM, Urbán-Ramirez J, Yamaguchi M, von Ziegesar O.  1998.  Population structure of nuclear and mitochondrial DNA variation among humpback whales in the North Pacific. Molecular Ecology. 7(6):695-707.
Olavarria C, Baker CS, Garrigue C, Poole MM, Hauser N, Caballero S, Flórez-González L, Brasseur M, Bannister JL, Capella J et al..  2007.  Population structure of humpback whales throughout the South Pacific and the origins of the eastern Polynesian breeding grounds. Marine Ecology Progress Series. 330:257-268.
Carroll E, Patenaude N, Alexander A, Steel DJ, Harcourt R, Childerhouse S, Smith S, Bannister JL, Constantine R, Baker CS.  2011.  Population structure and individual movement of southern right whales around New Zealand and Australia. Marine Ecology Progress Series. 432:257-268. Abstract
Mathews EA, Womble JN, Pendleton GW, Jemison LA, Maniscalco JM, Streveler G.  2011.  Population growth and colonization of Steller sea lions in the Glacier Bay region of southeastern Alaska: 1970s-2009. Marine Mammal Science. 27(4):852-880.
Baker CS, Gilbert DA, Weinrich MT, Lambertsen RH, Calambokidis J, McArdle B, Chambers GK, O'Brien SJ.  1993.  Population characteristics of DNA fingerprints in humpback whales (Megaptera novaeangliae). The Journal of heredity. 84(4):281-90. Abstract
Mellish JE, Thomton J, Horning M.  2007.  Physiological and behavioral response to intra-abdominal transmitter implantation in Steller sea lions. Journal of Experimental Marine Biology and Ecology. 351:283-293.
Dalebout ML, Steel DJ, Baker CS.  2008.  Phylogeny of the beaked whale genus Mesoplodon (Ziphiidae: Cetacea) revealed by nuclear introns: implications for the evolution of male tusks. Systematic Biology. 57(6):857-75. Abstract
Freshwater DW, Braly SK, Stuerke B, Hamner RM, York RA.  2005.  Phylogenetic analyses of North Carolina Rhodymeniales. I. The genus Asteromenia. Journal of the North Carolina Academy of Science. 121:49-55.
Constantine R, Russell K, Gibbs N, Childerhouse S, Baker CS.  2007.  Photo-identification of humpback whales in New Zealand waters and their migratory connections to breeding grounds of Oceania. Marine Mammal Science. 23:715-720.
Etnoyer P, Canny D, Mate B, Morgan LE.  2004.  Persistent pelagic habitats in the Baja California to Bering Sea (B2B) ecoregion. Oceanography. 17:90-101.
Mellish JE, Hennen D, Thomton J, Petrauskas L, Atkinson S, Calkins D.  2007.  Permanent marking in an endangered species: physiological response to hot branding in Steller sea lions (Eumetopias jubatus). Wildlife Research. 34:43-47.
Savage A, Rice JM, Brangan JM, Martini DP, Pugh JA.  1994.  The performance of African elephants (Loxodonta africana) and California sea lions (Zalophus californianus) on a two-choice object discrimination task. Zoo Biology. 13:69-75.
Kooyman GL, Kooyman TG, Horning M, Kooyman CA.  1996.  Penguin dispersal after fledging. Nature.
Oremus M, Poole MM, Albertson RG, Baker CS.  2012.  Pelagic or insular? Genetic differentiation of rough-toothed dolphins in the Society Islands, French Polynesia Journal of Experimental Marine Biology and Ecology. 432-433:37-46.
Carroll EL, CHILDERHOUSE SIMONJ, CHRISTIE MARK, Lavery S, PATENAUDE NATHALIE, Alexander A, Constantine R, Steel DJ, BOREN LAURA, Baker CS.  2012.  Paternity assignment and demographic closure in the New Zealand southern right whale. Molecular Ecology. 21(16):3960-3973.