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Laikre L, Allendorf FW, Aroner LC, Baker CS, Gregovich DP, Hansen MM, Jackson J, Kendall KC, McKelvey K, Neel MC et al..  2010.  Neglect of Genetic Diversity in Implementation of the Convention on Biological Diversity. Conservation Biology. 24(1):86-88.
Rice JM, Rubinstein B.  1998.  The New England Aquarium’s Responses to Marine Mammal Strandings. Historic Nantucket. 47:9-10.
Madon B, Gimenez O, McArdle B, Baker CS, Garrigue C.  2011.  A new method for estimating animal abundance with two sources of data in capture-recapture studies. Methods in Ecology and Evolution. 2(4):390-400. Abstract
Dalebout ML, Mead JG, Baker CS, Baker AN, Helden AL.  2002.  A New Species of Beaked Whale Mesoplodon perrini sp. n. (cetecea: ziphiidae) Discovered Through Phylogenetic Analyses of Mitochondrial DNA Sequences. Marine Mammal Science. 18(3):577-608.
Hickey AJR, Lavery S, Hannan DA, Baker CS, Clements KD.  2009.  New Zealand triplefin fishes (family Tripterygiidae): contrasting population structure and mtDNA diversity within a marine species flock. Molecular Ecology. 18(4):680-96. Abstract
Kapoor A, Slikas B, Simmonds P, Chieochansin T, Naeem A, Shaukat S, Alam MM, Sharif S, Angez M, Zaidi S et al..  2009.  A newly identified bocavirus species in human stool.. The Journal of Infectious Diseases. 199(2):196-200. Abstract
Dalebout ML, Baker CS, Steel DJ, Thompson K, Robertson KM, Chivers SJ, Perrin WF, Goonatilake M, Anderson RC, Mead JG et al..  2012.  A Newly Recognised Beaked Whale (Ziphiidae) in the Tropical Indo-Pacific: Mesoplodon hotaula or M. ginkgodens hotaula. Report to the Scientific Committee of the International Whaling Commission.
Petrauskas L, Tuomi PA, Atkinson S.  2006.  Noninvasive monitoring of stress hormone levels in a female Steller sea lion (Eumetopias jubatus) pup undergoing rehabilitation. Journal of Zoo and Wildlife Medicine. 37(1):75-78.
Baumgartner MF, Cole TVN, Clapham P, Mate B.  2003.  North Atlantic right whale habitat in the lower Bay of Fundy and on the Southwestern Scotian Shelf during 1999-2001. Marine Ecological Progress Series (MEPS). 264:137-154.
Durbin E, Teegarden G, Campbell R, Cembella A, Baumgartner MF, Mate B.  2002.  North Atlantic right whales, Eubalaena glacialis, exposed to paralytic shellfish poisoning (PSP) toxins via a zooplankton vector, Calanus finmarchicus. Harmful Algae. 1:243–251.
Mate B, Urbán-Ramirez J.  2003.  A note on the route and speed of a gray whale on its northern migration from Mexico to central California, tracked by satellite-monitored radio tag. Journal of Cetacean Research Management. 5:155-157.
Mate B, Lagerquist BA, Urbán-Ramirez J.  2003.  A note on using satellite telemetry to document the use of San Ignacio Lagoon by gray whales (Eschrichtius robustus) during their reproductive season. Journal of Cetacean Research and Management. 5:148-154.
Willis K, Horning M.  2005.  A novel approach to measuring heat flux in swimming animals. Journal of Experimental Marine Biology and Ecology. 315:147-162.
Thompson KF, Millar CD, Baker CS, Dalebout M, Steel DJ, van Helden AL, CONSTANTINE ROCHELLE.  2013.  A novel conservation approach provides insights into the management of rare cetaceans. Biological Conservation. 157:331-340.