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2004
Witteveen BH, Straley JM, von Ziegesar O, Steel DJ, Baker CS.  2004.  Abundance and mtDNA differentiation of humpback whales (Megaptera novaeangliae) in the Shumagin Islands, Alaska. Canadian Journal of Zoology. 82:1352-1359.
Garrigue C, Dodemont R, Steel DJ, Baker CS.  2004.  Organismal and 'gametic' capture-recapture using microsatellite genotyping confirm low abundance and reproductive autonomy of humpback whales on the wintering grounds of New Caledonia. Marine Ecology Progress Series. 274:251-262.
2007
Dalebout ML, Baker CS, Steel DJ, Robertson KM, Chivers SJ, Perrin WF, Mead JG, Grace RV, Schofield TD.  2007.  A divergent mtDNA lineage among Mesoplodon beaked whales: Molecular evidence for a new species in the tropical pacific? Marine Mammal Science. 23:954-966.
Oremus M, Poole MM, Steel DJ, Baker CS.  2007.  Isolation and interchange among insular spinner dolphin communities in the South Pacific revealed by individual identification and genetic diversity. Marine Ecology Progress Series. 336:275-289.
Oremus M, Poole MM, Steel DJ, Baker CS.  2007.  Isolation and interchange among insular spinner dolphin communities in the South Pacific revealed by individual identification and genetic diversity. Marine Ecology Progress Series. 336:275-289.
2008
Dalebout ML, Steel DJ, Baker CS.  2008.  Phylogeny of the beaked whale genus Mesoplodon (Ziphiidae: Cetacea) revealed by nuclear introns: implications for the evolution of male tusks. Systematic Biology. 57(6):857-75. Abstract
2009
Oremus M, Gales R, Dalebout ML, Funahashi N, Endo T, Kage T, Steel DJ, Baker CS.  2009.  Worldwide mitochondrial DNA diversity and phylogeography of pilot whales (Globicephala spp.). Biological Journal of the Linnean Society. 98(4):729-744.
Jackson J, Baker CS, Vant MD, Steel DJ, Medrano-Gonzalez L, Palumbi SR.  2009.  Big and slow: phylogenetic estimates of molecular evolution in baleen whales (suborder mysticeti). Molecular Biology and Evolution. 26(11):2427-40. Abstract
2010
Morin PA, Martien KK, Archer FI, Cipriano F, Steel DJ, Jackson J, Taylor BL.  2010.  Applied Conservation Genetics and the Need for Quality Control and Reporting of Genetic Data Used in Fisheries and Wildlife Management. Journal of Heredity. 101(1):1-10. Abstract
Baker CS, Steel DJ, Choi Y, Lee H, Kim KS, Choi SK, Ma Y-un, Hambleton C, Psihoyos L, Brownell RL et al..  2010.  Genetic evidence of illegal trade in protected whales links Japan with the US and South Korea. Biology Letters. Abstract
2011
Carroll E, Patenaude N, Alexander A, Steel DJ, Harcourt R, Childerhouse S, Smith S, Bannister JL, Constantine R, Baker CS.  2011.  Population structure and individual movement of southern right whales around New Zealand and Australia. Marine Ecology Progress Series. 432:257-268. Abstract
Witteveen BH, Straley JM, Chenoweth E, Baker CS, Barlow J, Matkin C, Gabriele CM, Neilson J, Steel DJ, von Ziegesar O et al..  2011.  Using movements, genetics and trophic ecology to differentiate inshore from offshore aggregations of humpback whales in the Gulf of Alaska. Endangered Species Research. 14(3):217-225.
2012
Schmitt NT, Double MC, Baker CS, Steel DJ, Jenner KCS, Jenner MN, Paton D, Gales R, Jarman SN, Gales N et al..  2012.  Low levels of genetic differentiation characterize Australian humpback whale (Megaptera novaeangliae) populations. Report to the Scientific Committee of the International Whaling Commission.
Jackson JA, Anderson M, Steel DJ, Brooks L, Baverstock P, Burns D, Clapham P, Constantine R, Franklin W, Franklin T et al..  2012.  Multistate measurements of genotype interchange between east Australia and Oceania (IWC breeding sub-stocks E1, E2, E3 and F) between 1999 and 2004. Report to the Scientific Committee of the International Whaling Commission.
Dalebout ML, Baker CS, Steel DJ, Thompson K, Robertson KM, Chivers SJ, Perrin WF, Goonatilake M, Anderson RC, Mead JG et al..  2012.  A Newly Recognised Beaked Whale (Ziphiidae) in the Tropical Indo-Pacific: Mesoplodon hotaula or M. ginkgodens hotaula. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Galletti B, Childerhouse S, Brownell, Jr. RL, Friedlaender A, Gales N, Hall A, Jackson J, Leaper R, Perryman W et al..  2012.  Report of the Symposium and Workshop on Living Whales in the Southern Ocean: Puerto Varas, Chile 27–29 March 2012. Report to the Scientific Committee of the International Whaling Commission.
Constantine R, Jackson JA, Steel DJ, Baker CS, Brooks L, Burns D, Clapham P, Hauser N, Madon B, Mattila D et al..  2012.  Abundance of humpback whales in Oceania using photo-identification and microsatellite genotyping. Marine Ecology Progress Series. 453:249-261.
Carroll EL, CHILDERHOUSE SIMONJ, CHRISTIE MARK, Lavery S, PATENAUDE NATHALIE, Alexander A, Constantine R, Steel DJ, BOREN LAURA, Baker CS.  2012.  Paternity assignment and demographic closure in the New Zealand southern right whale. Molecular Ecology. 21(16):3960-3973.
Baker CS, Hamner RM, Cooke J, Heimeier D, Vant M, Steel DJ, Constantine R.  2012.  Low abundance and probable decline of the critically endangered Maui's dolphin estimated by genotype capture-recapture. Animal Conservation.
2013
Alexander A, Steel DJ, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS.  2013.  Low Diversity in the Mitogenome of Sperm Whales Revealed by Next-Generation Sequencing. Genome Biology and Evolution. 5(1):113-129.
Thompson KF, Millar CD, Baker CS, Dalebout M, Steel DJ, van Helden AL, CONSTANTINE ROCHELLE.  2013.  A novel conservation approach provides insights into the management of rare cetaceans. Biological Conservation. 157:331-340.