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Freshwater DW, Greene JK, Hamner RM.  2006.  Seasonality of the invasive seaweed Gracilaria vermiculophyla along the south eastern coast of North Carolina. Journal of the North Carolina Academy of Science. 122:49-55.
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Freshwater DW, Braly SK, Stuerke B, Hamner RM, York RA.  2005.  Phylogenetic analyses of North Carolina Rhodymeniales. I. The genus Asteromenia. Journal of the North Carolina Academy of Science. 121:49-55.
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Freshwater WD, Hamner RM, Parham S, Wilbur AE.  2009.  Molecular evidence that the lionfishes Pterois miles and Pterois volitans are distinct species.. Journal of the North Carolina Academy of Science. 125(2):39-46.
Hamner RM, Freshwater DW, Whitfield PE.  2007.  Mitochondrial cytochrome b analysis reveals two invasive lionfish species with strong founder effects in the western Atlantic. Journal of Fish Biology. 71:214-222.
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Baker CS, Hamner RM, Cooke J, Heimeier D, Vant M, Steel DJ, Constantine R.  2012.  Low abundance and probable decline of the critically endangered Maui's dolphin estimated by genotype capture-recapture. Animal Conservation.
Hamner RM, CONSTANTINE ROCHELLE, Oremus M, Stanley M, Brown P, Baker CS.  2013.  Long-range movement by Hector's dolphins provides potential genetic enhancement for critically endangered Maui's dolphin. Marine Mammal Science. :n/a-n/a.
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Hamner RM, Pichler FB, Heimeier D, CONSTANTINE ROCHELLE, Baker CS.  2012.  Genetic differentiation and limited gene flow among fragmented populations of New Zealand endemic Hector’s and Maui’s dolphins. Conservation Genetics. 13(4):987-1002.
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Hamner RM, Oremus M, Stanley M, Brown P, Constantine R, Baker CS.  2012.  Estimating the abundance and effective population size of Maui’s dolphins using microsatellite genotypes in 2010–11, with retrospective matching to 2001–07.
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Oremus M, Hamner RM, Stanley M, Brown P, Baker CS, Constantine R.  2012.  Distribution, group characteristics and movements of the Critically Endangered Maui’s dolphin Cephalorhynchus hectori maui. Endangered Species Research. 19(1):1-10.
Freshwater DW, Montgomery F, Greene JK, Hamner RM, Williams M, Whitfield PE.  2006.  Distribution and identification of an invasive Gracilaria species that is hampering commercial fishing operations in southeastern North Carolina, USA. Biological Invasions. 8:631-637.