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2013
Thompson KF, Millar CD, Baker CS, Dalebout M, Steel DJ, van Helden AL, CONSTANTINE ROCHELLE.  2013.  A novel conservation approach provides insights into the management of rare cetaceans. Biological Conservation. 157:331-340.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Brownell RL, Stone GS.  2013.  Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati. Animal Conservation. :n/a-n/a.
Hamner RM, CONSTANTINE ROCHELLE, Oremus M, Stanley M, Brown P, Baker CS.  2013.  Long-range movement by Hector's dolphins provides potential genetic enhancement for critically endangered Maui's dolphin. Marine Mammal Science. :n/a-n/a.
Alexander A, Steel DJ, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS.  2013.  Low Diversity in the Mitogenome of Sperm Whales Revealed by Next-Generation Sequencing. Genome Biology and Evolution. 5(1):113-129.
2012
Johansson ML, Sremba AL, Feinberg LR, Banks MA, Peterson WT.  2012.  The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschii sequenced using 454 next-generation sequencing, with a phylogenetic analysis of their position in the Malacostracan family tree. Molecular Biology Reports. 39(9):9009-9021.
Johansson M, Duda E, Sremba AL, Banks M, Peterson W.  2012.  Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencing. Molecular Biology Reports. 39(5):5755-5760.
Endo T, Hotta Y, Hisamichi Y, Kimura O, Sato R, Haraguchi K, Funahashi N, Baker CS.  2012.  Stable isotope ratios and mercury levels in red meat products from baleen whales sold in Japanese markets. Ecotoxicology and Environmental Safety. 79:35-41.
Sremba AL, Hancock-Hanser B, Branch TA, LeDuc RL, Baker CS.  2012.  Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia). PLoS ONE. 7(3):e32579.
Oremus M, Hamner RM, Stanley M, Brown P, Baker CS, Constantine R.  2012.  Distribution, group characteristics and movements of the Critically Endangered Maui’s dolphin Cephalorhynchus hectori maui. Endangered Species Research. 19(1):1-10.
Baker CS, Hamner RM, Cooke J, Heimeier D, Vant M, Steel DJ, Constantine R.  2012.  Low abundance and probable decline of the critically endangered Maui's dolphin estimated by genotype capture-recapture. Animal Conservation.
Carroll EL, CHILDERHOUSE SIMONJ, CHRISTIE MARK, Lavery S, PATENAUDE NATHALIE, Alexander A, Constantine R, Steel DJ, BOREN LAURA, Baker CS.  2012.  Paternity assignment and demographic closure in the New Zealand southern right whale. Molecular Ecology. 21(16):3960-3973.
Constantine R, Jackson JA, Steel DJ, Baker CS, Brooks L, Burns D, Clapham P, Hauser N, Madon B, Mattila D et al..  2012.  Abundance of humpback whales in Oceania using photo-identification and microsatellite genotyping. Marine Ecology Progress Series. 453:249-261.
Peterson CH, Anderson SS, Cherr GN, Ambrose RF, Anghera S, Bay S, Blum M, Condon R, Dean TA, Graham M et al..  2012.  A Tale of Two Spills: Novel Science and Policy Implications of an Emerging New Oil Spill Model. BioScience. 62(5):461-469.
Hamner RM, Oremus M, Stanley M, Brown P, Constantine R, Baker CS.  2012.  Estimating the abundance and effective population size of Maui’s dolphins using microsatellite genotypes in 2010–11, with retrospective matching to 2001–07.
Sampson K, Merigo C, Lagueux K, Rice JM, Cooper R, Weber III SE, Kass P, Mandelman J, Innis C.  2012.  Clinical assessment and postrelease monitoring of 11 mass stranded dolphins on Cape Cod, Massachusetts. Marine Mammal Science. Abstract
Schmitt NT, Double MC, Baker CS, Steel DJ, Jenner KCS, Jenner MN, Paton D, Gales R, Jarman SN, Gales N et al..  2012.  Low levels of genetic differentiation characterize Australian humpback whale (Megaptera novaeangliae) populations. Report to the Scientific Committee of the International Whaling Commission.
Jackson JA, Anderson M, Steel DJ, Brooks L, Baverstock P, Burns D, Clapham P, Constantine R, Franklin W, Franklin T et al..  2012.  Multistate measurements of genotype interchange between east Australia and Oceania (IWC breeding sub-stocks E1, E2, E3 and F) between 1999 and 2004. Report to the Scientific Committee of the International Whaling Commission.
Dalebout ML, Baker CS, Steel DJ, Thompson K, Robertson KM, Chivers SJ, Perrin WF, Goonatilake M, Anderson RC, Mead JG et al..  2012.  A Newly Recognised Beaked Whale (Ziphiidae) in the Tropical Indo-Pacific: Mesoplodon hotaula or M. ginkgodens hotaula. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Sremba AL, Martin AR.  2012.  Proposal to the Scientific Committee: Single nuclear polymorphism (SNP) discovery and diversity in bones from South Georgia Island and contemporary Antarctic blue whales: a request for access to IDCR-SOWER biopsy samples (1990-2009). Report to the Scientific Committee of the International Whaling Commission.
Slikas B, Baker CS, Clapham P, Frasier TR, Seger J, Valenzuela L, Wade P.  2012.  Proposal to the Scientific Committee: Worldwide genetic diversity and phylogenetic relationships among right whales based on next-generation sequencing of complete mitochondrial geneomes and multiple nuclear loci. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Galletti B, Childerhouse S, Brownell, Jr. RL, Friedlaender A, Gales N, Hall A, Jackson J, Leaper R, Perryman W et al..  2012.  Report of the Symposium and Workshop on Living Whales in the Southern Ocean: Puerto Varas, Chile 27–29 March 2012. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Stone GS.  2012.  Species identity and local use of cetaceans in the Gilbert Islands, Republic of Kiribati. Report to the Scientific Committee of the International Whaling Commission.
Tiedemann R, Cipriano F, Morin PA, Hoelzel AR, Palsbøll P, Waples RS, Natoli L, Bachmann L, Postma L, Double MC et al..  2012.  Updated guidelines for DNA data quality control and error rate estimation, for genetic studies relevant to IWC management advice. Report to the Scientific Committee of the International Whaling Commission.
2011
Mathews EA, Womble JN, Pendleton GW, Jemison LA, Maniscalco JM, Streveler G.  2011.  Population growth and colonization of Steller sea lions in the Glacier Bay region of southeastern Alaska: 1970s-2009. Marine Mammal Science. 27(4):852-880.
Block BA, Jonsen ID, Jorgensen SJ, Winship AJ, Shaffer SA, Bograd SJ, Hazen EL, Foley DG, Breed GA, Harrison A-L et al..  2011.  Tracking apex marine predator movements in a dynamic ocean. Nature. 479:86-90.