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2013
Womble JN, Horning M, Lea M-A, Rehberg MJ.  2013.  Diving into the analysis of time–depth recorder and behavioural data records: A workshop summary. Deep Sea Research Part II: Topical Studies in Oceanography. 88-89:61-64.
Ruegg K, Rosenbaum HC, Anderson EC, Engel M, Rothschild A, Baker CS, Palumbi SR.  2013.  Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure. Conservation Genetics. 14(1):103-114.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Brownell RL, Stone GS.  2013.  Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati. Animal Conservation. :n/a-n/a.
2012
Constantine R, Jackson JA, Steel DJ, Baker CS, Brooks L, Burns D, Clapham P, Hauser N, Madon B, Mattila D et al..  2012.  Abundance of humpback whales in Oceania using photo-identification and microsatellite genotyping. Marine Ecology Progress Series. 453:249-261.
Sampson K, Merigo C, Lagueux K, Rice JM, Cooper R, Weber III SE, Kass P, Mandelman J, Innis C.  2012.  Clinical assessment and postrelease monitoring of 11 mass stranded dolphins on Cape Cod, Massachusetts. Marine Mammal Science. Abstract
Dalebout ML, Baker CS, Steel DJ, Thompson K, Robertson KM, Chivers SJ, Perrin WF, Goonatilake M, Anderson RC, Mead JG et al..  2012.  A Newly Recognised Beaked Whale (Ziphiidae) in the Tropical Indo-Pacific: Mesoplodon hotaula or M. ginkgodens hotaula. Report to the Scientific Committee of the International Whaling Commission.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Stone GS.  2012.  Species identity and local use of cetaceans in the Gilbert Islands, Republic of Kiribati. Report to the Scientific Committee of the International Whaling Commission.
2011
Barlow J, Calambokidis J, Falcone EA, Baker CS, Burdin AM, Clapham PJ, Ford JKB, Gabriele CM, LeDuc R, Mattila DK et al..  2011.  Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. Marine Mammal Science. 27(4):793-818.
Wintle NJP, Duffield DA, Barros NB, Jones RD, Rice JM.  2011.  Total mercury in stranded marine mammals from the Oregon and southern Washington coasts. Marine Mammal Science. 27(4):E268-E278. Abstract
Norman SA, Huggins J, Carpenter TE, Case JT, Lambourn DM, Rice JM, Calambokidis J, Gaydos JK, Hanson BM, Duffield DA et al..  2011.  The application of GIS and spatiotemporal analyses to investigations of unusual marine mammal strandings and mortality events. Marine Mammal Science.
Hollatz C, VILAÇA SIBELLETORRES, REDONDO RODRIGOAF, MARMONTEL MÍRIAM, Baker CS, Santos FR.  2011.  The Amazon River system as an ecological barrier driving genetic differentiation of the pink dolphin (Inia geoffrensis). Biological Journal of the Linnean Society. 102(4):812-827. Abstract
Garrigue C, Franklin T, Constantine R, Russell K, Burns D, Poole MM, Paton D, Hauser N, Oremus M, Childerhouse S et al..  2011.  First assessment of interchange of humpback whales between Oceania and the east coast of Australia. Journal of Cetacean Research and Management. (Special Issue 3):269-74.
Garrigue C, Constantine R, Poole MM, Hauser N, Clapham P, Donoghue M, Russell K, Paton D, Mattila DK, Robbins J et al..  2011.  Movement of individual humpback whales between wintering grounds of Oceania (South Pacific), 1999 to 2004. Journal of Cetacean Research and Management. (Special Issue 3):275-82.
2010
Pimper LE, Baker CS, Goodall NRP, Olavarria C, Remis MI.  2010.  Mitochondrial DNA variation and population structure of Commerson’s dolphins (Cephalorhynchus commersonii) in their southernmost distribution. Conservation Genetics. 11(6):2157-2168. Abstract
Laikre L, Allendorf FW, Aroner LC, Baker CS, Gregovich DP, Hansen MM, Jackson J, Kendall KC, McKelvey K, Neel MC et al..  2010.  Neglect of Genetic Diversity in Implementation of the Convention on Biological Diversity. Conservation Biology. 24(1):86-88.
Ruegg KC, Anderson EC, Baker CS, Vant MD, Jackson J, Palumbi SR.  2010.  Are Antarctic minke whales unusually abundant because of 20th century whaling? Molecular Ecology. 19(2):281-291.
Berman-Kowalewski M, Gulland F, Wilkin S, Calambokidis J, Mate B, Cordaro J, Rotstein D, St. Leger J, Collins P, Fahy K et al..  2010.  Association between blue whale mortality and ship strikes along the California coast. Aquatic Mammal. 36(1):59-66. Abstract
2009
Raum-Suryan KL, Jemison LA, Pitcher KW.  2009.  Entanglement of Steller sea lions (Eumetopias jubatus) in marine debris: identifying causes and finding solutions. Marine Pollution Bulletin. 58(10):1487-95. Abstract
Blinkova O, Rosario K, Li L, Kapoor A, Slikas B, Bernardin F, Breitbart M, Delwart E.  2009.  Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. Journal of Clinical Microbiology. 47(11):3507-13. Abstract
Tezanos-Pinto G, Baker CS, Russell K, Martien KK, Baird RW, Hutt A, Stone GS, Mignucci-Giannoni AA, Caballero S, Endo T et al..  2009.  A worldwide perspective on the population structure and genetic diversity of bottlenose dolphins (Tursiops truncatus) in New Zealand. The Journal of Heredity. 100(1):11-24. Abstract
Heimeier D, Baker CS, Duignan PJ, Russell K, Hutt A, Stone GS.  2009.  Confirmed expression of MHC class I and class II genes in the New Zealand endemic Hector's dolphin (Cephalorhynchus hectori). Marine Mammal Science. 25:68-90. Abstract
Sigler MF, Tollit DJ, Vollenweider JJ, Thedinga JF, Csepp DJ, Womble JN, Wong MA, Rehberg MJ, Trites AW.  2009.  Foraging response of a marine predator, the Steller sea lion, to seasonal changes in prey availability. Marine Ecology Progress Series. 388:243-261.
Schick RS, Halpin PN, Read AJ, Slay CS, Kraus SD, Mate B, Baumgartner MF, Roberts JJ, Good CP, Best BD et al..  2009.  Striking the right balance in right whale conservation. Can. J. Fisheries and Aquatic Sciences. 66:1399-1403. Abstract
2008
Caballero S, Jackson J, Mignucci-Giannoni AA, Barrios-Garrido H, Beltrán-Pedreros S, Montiel-Villalobos MAG, Robertson KM, Baker CS.  2008.  Molecular systematics of South American dolphins Sotalia: sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae. Molecular Phylogenetics and Evolution. 46(1):252-68. Abstract
2007
Robineau D, Goodall RNP, Pichler FB, Baker CS.  2007.  Description of a new subspecies of Commerson's dolphin, Cephalorhynchus commersonii (Lacépède, 1804), inhabiting the coastal waters of the Kerguelen Islands. Mammalia. 71:172-180.