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Burger AE, Masselink MM, Tillmanns AR, Szabo A, Farnholtz M, Krkosek MJ.  2004.  Effects of habitat fragmentation and forest edges on predators of marbled murrelets and other forest birds on southwest Vancouver Island. Proceedings of the Species at Risk 2004 Conference. :1-19.
Borkowski R, Moore P, Mumford S, Patchett K, Rice JM, Rubinstein B.  1999.  Extended use of subpalpebral levage systems for treatment of keratitis in a harbor seal (Phoca vitulina). International Association for Aquatic Animal Medicine Conference.
Blundell GM, Womble JN, Pendleton GW, Karpovich SA, Gende SM, Herreman JK.  2011.  Use of glacial ice and terrestrial habitats by harbor seals in Glacier Bay. Marine Ecology Progress Series.
Block BA, Jonsen ID, Jorgensen SJ, Winship AJ, Shaffer SA, Bograd SJ, Hazen EL, Foley DG, Breed GA, Harrison A-L et al..  2011.  Tracking apex marine predator movements in a dynamic ocean. Nature. 479:86-90.
Blinkova O, Rosario K, Li L, Kapoor A, Slikas B, Bernardin F, Breitbart M, Delwart E.  2009.  Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. Journal of Clinical Microbiology. 47(11):3507-13. Abstract
Best P, Mate B.  2007.  Sighting history and observations of southern right whales following satellite tagging off South Africa. Journal of Cetacean Research and Management. 9(2):111-114.
Berman-Kowalewski M, Gulland F, Wilkin S, Calambokidis J, Mate B, Cordaro J, Rotstein D, St. Leger J, Collins P, Fahy K et al..  2010.  Association between blue whale mortality and ship strikes along the California coast. Aquatic Mammal. 36(1):59-66. Abstract
Bentaleb I, Martin C, Vrac M, Mate B, Mayzaud P, Siret D, de Stephanis R, Guinet C.  2011.  Foraging ecology of Mediterranean fin whales in a changing environment elucidated by satellite ­tracking and baleen plate stable isotopes. Marine Ecology Progress Series. 438:285-302. Abstract
Benoit-Bird KJ, Gilly WF, Au WL, Mate B.  2008.  Controlled and in situ target strengths of the jumbo squid Dosidicus gigas and identification of potential acoustic scattering sources. The Journal of the Acoustical Society of America. 123(3):1318-28. Abstract
Baumgartner MF, Mate B.  2003.  Summertime foraging ecology of North Atlantic right whales. Marine Ecological Progress Series (MEPS). 264:123-135.
Baumgartner MF, Cole TVN, Clapham P, Mate B.  2003.  North Atlantic right whale habitat in the lower Bay of Fundy and on the Southwestern Scotian Shelf during 1999-2001. Marine Ecological Progress Series (MEPS). 264:137-154.
Baumgartner MF, Mate B.  2005.  Summer and fall habitat of North Atlantic right whales (Eubalaena glacialis) inferred from satellite telemetry. Canadian Journal of Fisheries and Aquatic Science. 62:527-543.
Barlow J, Calambokidis J, Falcone EA, Baker CS, Burdin AM, Clapham PJ, Ford JKB, Gabriele CM, LeDuc R, Mattila DK et al..  2011.  Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. Marine Mammal Science. 27(4):793-818.
Baker CS, Lento GM, Cipriano F, Palumbi SR.  2000.  Predicted decline of protected whales based on molecular genetic monitoring of Japanese and Korean markets. Proceedings of the Royal Society B: Biological Sciences. 267(1449):1191-1199.
Baker CS, Gilbert DA, Weinrich MT, Lambertsen RH, Calambokidis J, McArdle B, Chambers GK, O'Brien SJ.  1993.  Population characteristics of DNA fingerprints in humpback whales (Megaptera novaeangliae). The Journal of heredity. 84(4):281-90. Abstract
Baker CS, Cipriano F, Palumbi SR.  1996.  Molecular genetic identification of whale and dolphin products from commercial markets in Korea and Japan. Molecular Ecology. 5(5):671-685.
Baker CS, Vant MD, Dalebout ML, Lento GM, O'Brien SJ, Yuhki N.  2006.  Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (Suborder: Mysticeti). Immunogenetics. 58:283-296.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Stone GS.  2012.  Species identity and local use of cetaceans in the Gilbert Islands, Republic of Kiribati. Report to the Scientific Committee of the International Whaling Commission.
Baker CS.  2008.  A truer measure of the market: the molecular ecology of fisheries and wildlife trade. Molecular Ecology. 17(18):3985-98. Abstract
Baker CS, Hamner RM, Cooke J, Heimeier D, Vant M, Steel DJ, Constantine R.  2012.  Low abundance and probable decline of the critically endangered Maui's dolphin estimated by genotype capture-recapture. Animal Conservation.
Baker CS, Dalebout ML, Lento GM, Funahashi N.  2002.  Gray whale products sold in commercial markets along the Pacific coast of Japan. Marine Mammal Science. 18(1):295-300.
Baker CS, Palumbi SR, Lambertsen RH, Weinrich MT, Calambokidis J, O'Brien SJ.  1990.  Influence of seasonal migration on geographic distribution of mitochondrial DNA haplotypes in humpback whales. Nature. 344(6263):238-40. Abstract
Baker CS, Slade RW, Bannister JL, Abernethy RB, Weinrich MT, Lien J, Urbán-Ramirez J, Corkeron P, Calambokidis J, Vasquez O et al..  1994.  Hierarchical structure of mitochondrial DNA gene flow among humpback whales Megaptera novaeangliae, world-wide. Molecular Ecology. 3(4):313-327.
Baker CS, Steel DJ, Choi Y, Lee H, Kim KS, Choi SK, Ma Y-un, Hambleton C, Psihoyos L, Brownell RL et al..  2010.  Genetic evidence of illegal trade in protected whales links Japan with the US and South Korea. Biology Letters. Abstract
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Brownell RL, Stone GS.  2013.  Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati. Animal Conservation. :n/a-n/a.