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2013
Womble JN, Horning M, Lea M-A, Rehberg MJ.  2013.  Diving into the analysis of time–depth recorder and behavioural data records: A workshop summary. Deep Sea Research Part II: Topical Studies in Oceanography. 88-89:61-64.
Ruegg K, Rosenbaum HC, Anderson EC, Engel M, Rothschild A, Baker CS, Palumbi SR.  2013.  Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure. Conservation Genetics. 14(1):103-114.
Mellish J, Nienaber J, Polasek L, Horning M.  2013.  Beneath the surface: Profiling blubber depth in pinnipeds with infrared imaging. Journal of Thermal Biology. 38(1):10-13.
Thompson KF, Millar CD, Baker CS, Dalebout M, Steel DJ, van Helden AL, CONSTANTINE ROCHELLE.  2013.  A novel conservation approach provides insights into the management of rare cetaceans. Biological Conservation. 157:331-340.
Baker CS, Hutt A, Thompson K, Dalebout ML, Robins J, Brownell RL, Stone GS.  2013.  Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati. Animal Conservation. :n/a-n/a.
Hamner RM, CONSTANTINE ROCHELLE, Oremus M, Stanley M, Brown P, Baker CS.  2013.  Long-range movement by Hector's dolphins provides potential genetic enhancement for critically endangered Maui's dolphin. Marine Mammal Science. :n/a-n/a.
Tezanos-Pinto G, CONSTANTINE ROCHELLE, Brooks L, Jackson JA, Mourão F, Wells S, Baker CS.  2013.  Decline in local abundance of bottlenose dolphins (Tursiops truncatus) in the Bay of Islands, New Zealand. Marine Mammal Science. :n/a-n/a.
Alexander A, Steel DJ, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS.  2013.  Low Diversity in the Mitogenome of Sperm Whales Revealed by Next-Generation Sequencing. Genome Biology and Evolution. 5(1):113-129.
Oremus M, Gales R, Kettles H, Baker CS.  2013.  Genetic Evidence of Multiple Matrilines and Spatial Disruption of Kinship Bonds in Mass Strandings of Long-finned Pilot Whales, Globicephala melas. Journal of Heredity.
2012
Johansson ML, Sremba AL, Feinberg LR, Banks MA, Peterson WT.  2012.  The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschii sequenced using 454 next-generation sequencing, with a phylogenetic analysis of their position in the Malacostracan family tree. Molecular Biology Reports. 39(9):9009-9021.
Hamner RM, Pichler FB, Heimeier D, CONSTANTINE ROCHELLE, Baker CS.  2012.  Genetic differentiation and limited gene flow among fragmented populations of New Zealand endemic Hector’s and Maui’s dolphins. Conservation Genetics. 13(4):987-1002.
Jackson JA, Laikre L, Baker CS, Kendall KC.  2012.  Guidelines for collecting and maintaining archives for genetic monitoring. Conservation Genetics Resources. 4(2):527-536.
Johansson M, Duda E, Sremba AL, Banks M, Peterson W.  2012.  Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencing. Molecular Biology Reports. 39(5):5755-5760.
Endo T, Hotta Y, Hisamichi Y, Kimura O, Sato R, Haraguchi K, Funahashi N, Baker CS.  2012.  Stable isotope ratios and mercury levels in red meat products from baleen whales sold in Japanese markets. Ecotoxicology and Environmental Safety. 79:35-41.
Sremba AL, Hancock-Hanser B, Branch TA, LeDuc RL, Baker CS.  2012.  Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia). PLoS ONE. 7(3):e32579.
Horning M.  2012.  Constraint lines and performance envelopes in behavioral physiology: the case of the aerobic dive limit. Frontiers in Physiology. 3
Oremus M, Poole MM, Albertson RG, Baker CS.  2012.  Pelagic or insular? Genetic differentiation of rough-toothed dolphins in the Society Islands, French Polynesia Journal of Experimental Marine Biology and Ecology. 432-433:37-46.
Thompson K, Baker CS, van Helden A, Patel S, Millar C, CONSTANTINE ROCHELLE.  2012.  The world’s rarest whale. Current Biology. 22(21):R905-R906.
Oremus M, Hamner RM, Stanley M, Brown P, Baker CS, Constantine R.  2012.  Distribution, group characteristics and movements of the Critically Endangered Maui’s dolphin Cephalorhynchus hectori maui. Endangered Species Research. 19(1):1-10.
Baker CS, Hamner RM, Cooke J, Heimeier D, Vant M, Steel DJ, Constantine R.  2012.  Low abundance and probable decline of the critically endangered Maui's dolphin estimated by genotype capture-recapture. Animal Conservation.
Carroll EL, CHILDERHOUSE SIMONJ, CHRISTIE MARK, Lavery S, PATENAUDE NATHALIE, Alexander A, Constantine R, Steel DJ, BOREN LAURA, Baker CS.  2012.  Paternity assignment and demographic closure in the New Zealand southern right whale. Molecular Ecology. 21(16):3960-3973.
Pierszalowski SP, Ferrari M, Glockner-Ferrari D, Mizroch S, Clapham PJ, Dickerson BR.  2012.  Investigating the feasibility of using DNA from sloughed skin for individual identification and kinship analysis in humpback whales (Megaptera novaeangliae). Marine Mammal Science.
Constantine R, Jackson JA, Steel DJ, Baker CS, Brooks L, Burns D, Clapham P, Hauser N, Madon B, Mattila D et al..  2012.  Abundance of humpback whales in Oceania using photo-identification and microsatellite genotyping. Marine Ecology Progress Series. 453:249-261.
Peterson CH, Anderson SS, Cherr GN, Ambrose RF, Anghera S, Bay S, Blum M, Condon R, Dean TA, Graham M et al..  2012.  A Tale of Two Spills: Novel Science and Policy Implications of an Emerging New Oil Spill Model. BioScience. 62(5):461-469.
Hamner RM, Oremus M, Stanley M, Brown P, Constantine R, Baker CS.  2012.  Estimating the abundance and effective population size of Maui’s dolphins using microsatellite genotypes in 2010–11, with retrospective matching to 2001–07.